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general:tudatalib [2025-04-29 11:32] – Suvendu Mandalgeneral:tudatalib [2025-05-05 15:43] (current) – visual Hayden Robertson
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 Open science is greatly enhanced by using open-source software like [[https://www.python.org/|Python]] (using an environment manager such as [[https://docs.anaconda.com/miniconda/|conda]]) and [[https://jupyter.org/|Jupyter Notebooks]]. Jupyter Notebooks are a powerful asset, seamlessly integrating code, data, and documentation into a single interactive document. This promotes reproducible research and simplifies the process of sharing work with students for training or colleagues for verification. By using these tools and making your work openly accessible, you contribute to a transparent and collaborative scientific community. Open science is greatly enhanced by using open-source software like [[https://www.python.org/|Python]] (using an environment manager such as [[https://docs.anaconda.com/miniconda/|conda]]) and [[https://jupyter.org/|Jupyter Notebooks]]. Jupyter Notebooks are a powerful asset, seamlessly integrating code, data, and documentation into a single interactive document. This promotes reproducible research and simplifies the process of sharing work with students for training or colleagues for verification. By using these tools and making your work openly accessible, you contribute to a transparent and collaborative scientific community.
  
-{{ :agklitzing:reproducibility.png?nolink&600 |}}+{{ general:reproducibility.png?nolink&600 |}} 
  
-More information can be seen in the presentation from 11.07.2024, which can be downloaded here {{ :agklitzing:240711_datamanagement.pdf |Data management presentation}}. 
  
 Additionally, you can use 100 GB of free storage on a Hessian-hosted server called [[HESSENBOX]]. Additionally, you can use 100 GB of free storage on a Hessian-hosted server called [[HESSENBOX]].
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 Go to https://tudatalib.ulb.tu-darmstadt.de/login and logon with your TU-ID (//personal login id//).  Go to https://tudatalib.ulb.tu-darmstadt.de/login and logon with your TU-ID (//personal login id//). 
-{{:agklitzing:openscience_1.png?600|}}+{{general:openscience_1.png?600|}}
  
 If this is not your first logon, skip to [[agklitzing:data_repositories_and_open_science#start_a_new_submission|Start a new submission]]. If this is your first login, follow the steps below; you will be prompted through registration steps. After login, you can "subscribe" to the SMI repository. This is not essential, but makes later steps easier. To do this, click on your name at the top right hand corner of the website.  If this is not your first logon, skip to [[agklitzing:data_repositories_and_open_science#start_a_new_submission|Start a new submission]]. If this is your first login, follow the steps below; you will be prompted through registration steps. After login, you can "subscribe" to the SMI repository. This is not essential, but makes later steps easier. To do this, click on your name at the top right hand corner of the website. 
-{{:agklitzing:openscience_2.png?600|}}+ 
 +{{general:openscience_2.png?600|}}
  
  
 Then, under the subscriptions heading, select the SMI collection (T050205). Make sure to click "Add" after selecting, followed by "Update profile". Then, under the subscriptions heading, select the SMI collection (T050205). Make sure to click "Add" after selecting, followed by "Update profile".
-{{:agklitzing:openscience_3.png?600|}}+ 
 +{{general:openscience_3.png?600|}}
  
 ==== Start a new submission ==== ==== Start a new submission ====
  
-**NOTE: Before starting your submission, please contact [[hayden.robertson@pkm.tu-darmstadt.de|Hayden]] or [[suvendu.mandal@pkm.tu-darmstadt.de|Suvendu]] to finalise your account. Please only contact us after completing the above steps.**+**NOTE: Before starting your submission, please contact [[suvendu.mandal@pkm.tu-darmstadt.de|Suvendu]] or [[markus.rosenstihl@pkm.tu-darmstadt.de|Markus]] or [[christian.kolb@pkm.tu-darmstadt.de|Christian]] to finalise your account. Please only contact us after completing the above steps.**
  
 Below is a brief tutorial on how to create a submission on TUdatalib. Suggestions are made as a guide. You can save your submission as a draft at any time to continue later by selecting the "Save and exit" button at the bottom of the form.  Below is a brief tutorial on how to create a submission on TUdatalib. Suggestions are made as a guide. You can save your submission as a draft at any time to continue later by selecting the "Save and exit" button at the bottom of the form. 
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  **1)** Navigate to https://tudatalib.ulb.tu-darmstadt.de/submit and select //Weiche Materie an Grenzflächen// (T050205) from the dropdown menu. Then select next.  **1)** Navigate to https://tudatalib.ulb.tu-darmstadt.de/submit and select //Weiche Materie an Grenzflächen// (T050205) from the dropdown menu. Then select next.
  
-{{:agklitzing:openscience_4.png?600|}}+{{general:openscience_4.png?600|}}
  
  **2) INFORMATION**: Read the information in in the **Note** section, and make sure that publishing your data on the repository is permitted. When ready, select next.  **2) INFORMATION**: Read the information in in the **Note** section, and make sure that publishing your data on the repository is permitted. When ready, select next.
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   * The "Relation" should eventually be linked to the publication. During the initial creation of the data repository you may not have the DOI of the article. This can be updated later.   * The "Relation" should eventually be linked to the publication. During the initial creation of the data repository you may not have the DOI of the article. This can be updated later.
  
-{{:agklitzing:openscience_5.png?600|}}+{{general:openscience_5.png?600|}}
  
  **4) DESCRIBE II**: This is where you will provide the metadata for your data. Be sure to provide information on the purpose of the data, a description on the file/folder structure, a detailed description of what your data is (i.e., AFM images, reflectivity curves, etc.) and a description of the analysis pipeline (any analysis scripts or notebooks, links to other open-source software). This should also be reflected in the "Type" of data chosen.   **4) DESCRIBE II**: This is where you will provide the metadata for your data. Be sure to provide information on the purpose of the data, a description on the file/folder structure, a detailed description of what your data is (i.e., AFM images, reflectivity curves, etc.) and a description of the analysis pipeline (any analysis scripts or notebooks, links to other open-source software). This should also be reflected in the "Type" of data chosen. 
  
-{{:agklitzing:openscience_6.png?600|}}+{{general:openscience_6.png?600|}}
  
  **5) ACCESS**: Here you will define the access to the repository.   **5) ACCESS**: Here you will define the access to the repository. 
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   * CLOSED: Alternatively, you may want to limit access during the peer review process, allowing only the reviewers to view the repository. To do this, select T050205 and then request a provide token from the admins at [[mailto:tudata@tu-darmstadt.de|tudata@tu-darmstadt.de]].    * CLOSED: Alternatively, you may want to limit access during the peer review process, allowing only the reviewers to view the repository. To do this, select T050205 and then request a provide token from the admins at [[mailto:tudata@tu-darmstadt.de|tudata@tu-darmstadt.de]]. 
  
-{{:agklitzing:openscience_7.png?600|}}+{{general:openscience_7.png?600|}}
  
  **6) UPLOAD**: Here you will upload your data. For large volumes of data it is recommended to archive/zip them. For example, you may want to archive all Zetasizer files in one zip and all DLS files in another zip, then provide the appropriate analysis notebooks or code. Note: the ''%%README.txt%%'' file should contain the "Description" text that was provided in step 4.  **6) UPLOAD**: Here you will upload your data. For large volumes of data it is recommended to archive/zip them. For example, you may want to archive all Zetasizer files in one zip and all DLS files in another zip, then provide the appropriate analysis notebooks or code. Note: the ''%%README.txt%%'' file should contain the "Description" text that was provided in step 4.
  
-{{:agklitzing:openscience_8.png?600|}}+{{general:openscience_8.png?600|}}
  
  **7) LICENSE**: Here you will select your license. This is very important. If you are unsure which license to select, consult your supervisor, generally, however, a //CC BY License// or //ODC BY License// is frequently used for data repositories and a //3-Clause BSD License// is used for code repositories.  **7) LICENSE**: Here you will select your license. This is very important. If you are unsure which license to select, consult your supervisor, generally, however, a //CC BY License// or //ODC BY License// is frequently used for data repositories and a //3-Clause BSD License// is used for code repositories.
  
-{{:agklitzing:openscience_9.png?600|}}+{{general:openscience_9.png?600|}}
  
  **8) REVIEW & SUBMIT**: The final stage of the submission process is to review your submission. Most metadata can be changed post-submission, however, the re-uploading of data files will trigger the issuance of a new DOI. Ideally this is to be avoided.  **8) REVIEW & SUBMIT**: The final stage of the submission process is to review your submission. Most metadata can be changed post-submission, however, the re-uploading of data files will trigger the issuance of a new DOI. Ideally this is to be avoided.
 When you are ready, grant the agreement and select "Complete Submission".  When you are ready, grant the agreement and select "Complete Submission". 
  
-{{:agklitzing:openscience_10.png?600|}}+{{general:openscience_10.png?600|}}
  
 You can now view your submission! You can now view your submission!
  
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 ==== FAQ ==== ==== FAQ ====
general/tudatalib.1745919143.txt.gz · Last modified: by Suvendu Mandal